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The development and controversy of competitive endogenous RNA hypothesis in non-coding genes

| Steven WashingtonSteven Washington | 0 Comment
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As a momentous post-transcriptional regulator, microRNAs (miRNAs) are attracting more and more attention. The classical miRNAs regulated mechanism shows it binds to the targets’ 3’UTR thus play the role in post-transcription.

Meanwhile, single miRNA can target multiple genes, so those should compete to bind that miRNA. Vice versa, single gene can sponge mass of miRNAs as well. Thus the competitive endogenous RNAs (ceRNAs) hypothesis was put forward in 2011.

The ceRNA hypothesis has made huge achievements, in particular in non-coding genes, which including long non-coding RNAs (lncRNAs), circle RNAs (circRNAs) and pseudogenes, even viral transcripts. It also contributed greatly to epigenetics development.

However, an increasing number of controversies have occurred with applause. Based on this situation, this review introduces something in detail about the ceRNAs hypothesis achieved in lncRNAs,circRNAs, pseudogenes and viral transcripts, respectively. Meanwhile, it also covers controversy of the ceRNAs hypothesis

RNA silencing of hormonal biosynthetic genes impairs larval growth and development in cotton bollworm, Helicoverpa armigera

The cotton bollworm, Helicoverpa armigera, is a highly polyphagous pest, causing enormous losses to various economically important crops. The identification and in vitro functional validation of target genes of a pest is a prerequisite to combat pest via host-mediated RNA interference (RNAi).

In the present study, six hormonal biosynthesis genes of H. armigera were chosen and evaluated by feeding insect larvae with dsRNAs corresponding to each target gene, viz., juvenile hormone acid methyltransferase (HaJHAMT), prothoracicotropic hormone (HaPTTH), pheromone biosynthesis-activating peptide (HaPBAP), molt regulating transcription factor (HaHR3), activated protein 4 (HaAP-4) and eclosion hormone precursor (HaEHP).

The loss of function phenotypes for these hormonal genes were observed by releasing second instar larvae on to artificial diet containing target gene-specific dsRNAs. Ingestion of dsRNAs resulted in mortality ranging from 60% to 90%, reduced larval weight, phenotypic deformities and delayed pupation. The quantitative real-time PCR (qRT-PCR) analysis showed that the target gene transcript levels were decreased drastically (31% to 77%) as compared to control or unrelated control (GFP-dsRNA), and correlated well with the mortality and developmental defects of larvae.

Also, a comparison of the silencing efficacy of un-diced long HaPTTH -dsRNAwith RNase III diced HaPTTH-dsRNA (siRNAs) revealed that long dsRNAs were more efficient in silencing the target gene. These results indicated that the hormonal biosynthesis genes have varied sensitivity towards RNAi and could be the vital targets for insect resistance in crop plants like cotton which are infested by H. armigera.

 

Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria

Bilateria are the predominant clade of animals on Earth. Despite having evolved a wide variety of body plans and developmental modes, they are characterized by common morphological traits. By default, researchers have tried to link clade-specific genes to these traits, thus distinguishing bilaterians from non-bilaterians, by their gene content.

Here we argue that it is rather biological processes that unite Bilateria and set them apart from their non-bilaterian sisters, with a less complex body morphology. To test this hypothesis, we compared proteomes of bilaterian and non-bilaterian species in an elaborate computational pipeline, aiming to search for a set of bilaterian-specific genes.

Despite the limited confidence in their bilaterian specificity, we nevertheless detected Bilateria-specific functional and developmental patterns in the sub-set of genes conserved in distantly related Bilateria. Using a novel multi-species GO-enrichment method, we determined the functional repertoire of genes that are widely conserved among Bilateria. Analyzing expression profiles in three very distantly related model species-D. melanogaster, D. rerio and C. elegans-we find characteristic peaks at comparable stages of development and a delayed onset of expression in embryos. In particular, the expression of the conserved genes appears to peak at the phylotypic stage of different bilaterian phyla.

In summary, our study illustrate how development connects distantly related Bilateria after millions of years of divergence, pointing to processes potentially separating them from non-bilaterians. We argue that evolutionary biologists should return from a purely gene-centric view of evolution and place more focus on analyzing and defining conserved developmental processes and periods.

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The impact of cross-kingdom molecular forensics on Genetic privacy

Recent advances in metagenomic technology and computational prediction may inadvertently weaken an individual’s reasonable expectation of privacy. Through cross-kingdom genetic and metagenomic forensics, we can already predict at least a dozen human phenotypes with varying degrees of accuracy.

There is also growing potential to detect a “molecular echo” of an individual’s microbiome from cells deposited on public surfaces. At present, host genetic data from somatic or germ cells provide more reliable information than microbiome samples.

However, the emerging ability to infer personal details from different microscopic biological materials left behind on surfaces requires in-depth ethical and legal scrutiny. There is potential to identify and track individuals, along with new, surreptitious means of genetic discrimination.

This commentary underscores the need to update legal and policy frameworks for genetic privacy with additional considerations for the information that could be acquired from microbiome-derived data. The article also aims to stimulate ubiquitous discourse to ensure the protection of genetic rights and liberties in the post-genomic era. Video abstract.

MiR-340 promotes the proliferation of vascular smooth muscle cells by targeting von Hippel-Lindau tumor suppressor (VHL) Gene

MiRNAs play key roles in the proliferation of vascular smooth muscle cells (VSMCs). However, the roles and underlying mechanism of miRNAs in VSMCs are not fully understood. The aim of this study was to evaluate the role of miR-340 in the proliferation of VSMCs.

 

The expression levels of miR-340 and von Hippel-Lindau tumor-suppressor (VHL) in VSMCs induced by platelet-derived growth factor (PDGF) -BB or fetal bovine serum (FBS) were measured by q-PCR. The effects of miR-340 and VHL on cell proliferation and invasion were evaluated by CCK-8 assay.

Target gene prediction and screening as well as luciferase reporter assay were performed to verify the downstream target genes of miR-340. Western blotting was used to detect the protein expression levels of vascular endothelial growth factor (VEGF) and VHL.

Our results showed that the miR-340 was up-regulated in PDGF-BB_ENREF_1or FBS induced VSMCs. In addition, overexpression of miR-340 promoted VSMCs proliferation and invasion. Moreover, VHL was found to be a potential target for miR-340, and up-regulation of VHL inhibited VSMCs proliferation.

MiR-340 plays a critical role in VSMC proliferation and neointimal hyperplasia in rats carotid balloon injury model. Reduced expression levels of miR-340 promoted VHL-inhibited VSMCs proliferation. In conclusion, miR-340 may play a role in the regulation of proliferation of VSMCs by inhibition of VHL.

 

Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Hu-48T DL Develop 48T
EUR 498
Description: A sandwich quantitative ELISA assay kit for detection of Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from tissue homogenates, cell lysates or other biological fluids.

Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Hu-96T DL Develop 96T
EUR 647
Description: A sandwich quantitative ELISA assay kit for detection of Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from tissue homogenates, cell lysates or other biological fluids.

Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Mu-48T DL Develop 48T
EUR 508
Description: A sandwich quantitative ELISA assay kit for detection of Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from tissue homogenates, cell lysates or other biological fluids.

Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Mu-96T DL Develop 96T
EUR 661
Description: A sandwich quantitative ELISA assay kit for detection of Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from tissue homogenates, cell lysates or other biological fluids.

Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Ra-48T DL Develop 48T
EUR 528
Description: A sandwich quantitative ELISA assay kit for detection of Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from serum, plasma, tissue homogenates, cell lysates or other biological fluids.

Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

DLR-MYC-Ra-96T DL Develop 96T
EUR 690
Description: A sandwich quantitative ELISA assay kit for detection of Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) in samples from serum, plasma, tissue homogenates, cell lysates or other biological fluids.

Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Hu-48Tests Reddot Biotech 48 Tests
EUR 522

Human V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Hu-96Tests Reddot Biotech 96 Tests
EUR 724

Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Mu-48Tests Reddot Biotech 48 Tests
EUR 534

Mouse V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Mu-96Tests Reddot Biotech 96 Tests
EUR 742

Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Ra-48Tests Reddot Biotech 48 Tests
EUR 558

Rat V-Myc Myelocytomatosis Viral Oncogene Homolog (MYC) ELISA Kit

RDR-MYC-Ra-96Tests Reddot Biotech 96 Tests
EUR 776

c-Myc Epitope (Myc) Antibody

20-abx130438 Abbexa
  • EUR 314.00
  • EUR 759.00
  • EUR 411.00
  • EUR 154.00
  • EUR 244.00
  • 100 ug
  • 1 mg
  • 200 ug
  • 20 ug
  • 50 ug

c-Myc Epitope (Myc) Antibody

20-abx132269 Abbexa
  • EUR 439.00
  • EUR 133.00
  • EUR 1261.00
  • EUR 606.00
  • EUR 342.00
  • 100 ug
  • 10 ug
  • 1 mg
  • 200 ug
  • 50 ug

c-Myc Oncoprotein; Clone 9E10.3 (Concentrate)

RA0226-C.1 ScyTek Laboratories 0.1 ml
EUR 125

c-Myc Oncoprotein; Clone 9E10.3 (Concentrate)

RA0226-C.5 ScyTek Laboratories 0.5 ml
EUR 300

c-Myc Oncoprotein; Clone MYC909 (Concentrate)

RA0227-C.1 ScyTek Laboratories 0.1 ml
EUR 125

c-Myc Oncoprotein; Clone MYC909 (Concentrate)

RA0227-C.5 ScyTek Laboratories 0.5 ml
EUR 300

C-myc Antibody

48044-100ul SAB 100ul
EUR 333

C-myc Antibody

48044-50ul SAB 50ul
EUR 239

c-MYC Antibody

AF0358 Affbiotech 200ul
EUR 304
Description: MYC antibody detects endogenous levels of total MYC.

C-Myc Antibody

3995-100 Biovision
EUR 327

C-Myc Antibody

3995-30T Biovision
EUR 146

C-Myc Antibody

6767-100 Biovision
EUR 316

C-myc antibody

20R-CC001 Fitzgerald 200 ug
EUR 381
Description: Chicken polyclonal C-myc antibody

c Myc antibody

10R-8403 Fitzgerald 100 ul
EUR 393
Description: Mouse monoclonal c Myc antibody

C-myc antibody

10R-C101a Fitzgerald 100 ug
EUR 543
Description: Mouse monoclonal C-myc antibody

C-myc antibody

70-CC18 Fitzgerald 100 ug
EUR 331
Description: Affinity purified Chicken polyclonal C-myc antibody

C-myc antibody

70R-10651 Fitzgerald 1 ml
EUR 430
Description: Affinity purified Chicken polyclonal C-myc antibody

c-Myc antibody

70R-32862 Fitzgerald 100 ug
EUR 457
Description: Rabbit polyclonal c-Myc antibody

C-myc antibody

70R-CG001 Fitzgerald 100 ul
EUR 381
Description: Affinity purified Goat polyclonal C-myc antibody

Human recombinant purified His-tag c-myc protein (~65 kda) control

MYC17-C Alpha Diagnostics 100 ul
EUR 286

Monoclonal MYC / c-Myc Antibody (aa408-420)

AMM02198G Leading Biology 0.05mg
EUR 484
Description: A Monoclonal antibody against Human MYC / c-Myc (aa408-420). The antibodies are raised in Mouse. This antibody is applicable in IHC-P, E

Polyclonal MYC / c-Myc Antibody (aa25-74)

APR02915G Leading Biology 0.05ml
EUR 484
Description: A polyclonal antibody raised in Rabbit that recognizes and binds to Human MYC / c-Myc (aa25-74). This antibody is tested and proven to work in the following applications:

Polyclonal MYC / c-Myc Antibody (aa386-435)

APR02947G Leading Biology 0.05ml
EUR 484
Description: A polyclonal antibody raised in Rabbit that recognizes and binds to Human MYC / c-Myc (aa386-435). This antibody is tested and proven to work in the following applications:

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx118000 Abbexa
  • EUR 551.00
  • EUR 481.00
  • 100 ul
  • 50 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx037911-100ug Abbexa 100 ug
EUR 391

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx133153 Abbexa
  • EUR 300.00
  • EUR 439.00
  • EUR 189.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx133248 Abbexa
  • EUR 300.00
  • EUR 439.00
  • EUR 189.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx133250 Abbexa
  • EUR 300.00
  • EUR 439.00
  • EUR 189.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx133912 Abbexa
  • EUR 356.00
  • EUR 537.00
  • EUR 217.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx139766-01mg Abbexa 0.1 mg
EUR 384

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx137079 Abbexa
  • EUR 356.00
  • EUR 523.00
  • 0.5 mg
  • 1 mg

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx008959 Abbexa
  • EUR 300.00
  • EUR 439.00
  • EUR 189.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene Protein (c-Myc) Antibody

20-abx008960 Abbexa
  • EUR 300.00
  • EUR 439.00
  • EUR 189.00
  • 100 ul
  • 200 ul
  • 30 ul

Myc Proto-Oncogene (C-Myc Peptide) Antibody

abx023934-100ug Abbexa 100 ug
EUR 314

Myc Proto-Oncogene (C-Myc Peptide) Antibody

abx023935-01ml Abbexa 0.1 ml
EUR 314

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx018354-100ug Abbexa 100 ug
EUR 495

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx022462-02mg Abbexa 0.2 mg
EUR 523

Myc Proto-Oncogene (c-Myc Peptide) Antibody

abx022463-02mg Abbexa 0.2 mg
EUR 509

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx413504-01mg Abbexa 0.1 mg
EUR 634

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx413821-1mg Abbexa 1 mg
EUR 829

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx413825-2mg Abbexa 2 mg
EUR 1525

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx413826-01mg Abbexa 0.1 mg
EUR 411

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx413829-20ug Abbexa 20 ug
EUR 272

Myc Proto-Oncogene Protein (c-MYC) Antibody

abx231791-100ug Abbexa 100 ug
EUR 551

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx448567-100ug Abbexa 100 ug
EUR 523

Myc Proto-Oncogene Protein (c-Myc) Antibody

abx448568-100ug Abbexa 100 ug
EUR 523

c-Myc

RA25085 Neuromics 100 ul
EUR 513

C-Myc

MYCF-100T ImmunoStep 100 test
EUR 505

c-Myc Polyclonal Antibody

ES6307-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

c-Myc Polyclonal Antibody

ES6307-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

c-Myc Polyclonal Antibody

ES6308-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

c-Myc Polyclonal Antibody

ES6308-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

Anti-c-Myc Antibody

PA1555 BosterBio 100ug/vial
EUR 294

Anti-c-Myc Antibody

PB9092 BosterBio 100ug/vial
EUR 334

c-Myc Polyclonal Antibody

ES2009-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

c-Myc Polyclonal Antibody

ES2011-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, IF, WB, ELISA

c-Myc Polyclonal Antibody

EA053-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human. This antibody is tested and validated for WB, ELISA, IHC

c-Myc Polyclonal Antibody

EA053-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human. This antibody is tested and validated for WB, ELISA, IHC

c-Myc Polyclonal Antibody

ES2009-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

c-Myc Polyclonal Antibody

ES2010-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, IF, WB, ELISA

c-Myc Polyclonal Antibody

ES2010-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, IF, WB, ELISA

c-Myc Polyclonal Antibody

ES2011-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human/Mouse/Rat. This antibody is tested and validated for WB, ELISA, IHC, IF, WB, ELISA

c-Myc Polyclonal Antibody

ES1182-100ul ELK Biotech 100ul
EUR 279
Description: A Rabbit Polyclonal antibody against c-Myc from Human. This antibody is tested and validated for WB, ELISA

c-Myc Polyclonal Antibody

ES1182-50ul ELK Biotech 50ul
EUR 207
Description: A Rabbit Polyclonal antibody against c-Myc from Human. This antibody is tested and validated for WB, ELISA

Anti-c-Myc antibody

STJ119460 St John's Laboratory 100 µl
EUR 277
Description: The protein encoded by this gene is a multifunctional, nuclear phosphoprotein that plays a role in cell cycle progression, apoptosis and cellular transformation. It functions as a transcription factor that regulates transcription of specific target genes. Mutations, overexpression, rearrangement and translocation of this gene have been associated with a variety of hematopoietic tumors, leukemias and lymphomas, including Burkitt lymphoma. There is evidence to show that alternative translation initiations from an upstream, in-frame non-AUG (CUG) and a downstream AUG start site result in the production of two isoforms with distinct N-termini. The synthesis of non-AUG initiated protein is suppressed in Burkitt's lymphomas, suggesting its importance in the normal function of this gene.

Anti-C-myc antibody

STJ160092 St John's Laboratory 7 mL P
EUR 695

Anti-c-myc antibody

STJ180021 St John's Laboratory 0.1 ml
EUR 235

Polyclonal C-Myc Antibody

APR00240G Leading Biology 0.1mg
EUR 484
Description: A polyclonal antibody raised in Rabbit that recognizes and binds to Human C-Myc . This antibody is tested and proven to work in the following applications:

c-Myc Tag Antibody

35536-100ul SAB 100ul
EUR 252

c-Myc Polyclonal Antibody

ABP51010-003ml Abbkine 0.03ml
EUR 158
Description: A polyclonal antibody for detection of c-Myc from Human, Mouse, Rat. This c-Myc antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from human c-Myc around the non-phosphorylation site of T358

c-Myc Polyclonal Antibody

ABP51010-01ml Abbkine 0.1ml
EUR 289
Description: A polyclonal antibody for detection of c-Myc from Human, Mouse, Rat. This c-Myc antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from human c-Myc around the non-phosphorylation site of T358

c-Myc Polyclonal Antibody

ABP51010-02ml Abbkine 0.2ml
EUR 414
Description: A polyclonal antibody for detection of c-Myc from Human, Mouse, Rat. This c-Myc antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from human c-Myc around the non-phosphorylation site of T358

c-Myc Polyclonal Antibody

ABP51011-003ml Abbkine 0.03ml
EUR 158
Description: A polyclonal antibody for detection of c-Myc from Human, Mouse, Rat. This c-Myc antibody is for WB, IHC-P, IF, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from the C-terminal region of human c-Myc at AA range: 360-440
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